7VH9
Solution structure of the chimeric peptide of the first SURP domain of Human SF3A1 and the interacting region of SF1.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C,15N-SEPARATED_NOESY SPECTRA | 1.4 mM [U-99% 13C; U-99% 15N] protein | 90% H2O/10% D2O | 20 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 12 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
2 | structure calculation | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | MagRO-NMRView | Kobayshi, N. | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | collection | TopSpin | 2.1 | Bruker Biospin |
6 | processing | NMRPipe | 2007 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
7 | geometry optimization | TALOS | 2007 | Cornilescu, Delaglio and Bax |