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Structure of Horcolin native form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X1V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293 0.2 M Magnesium chloride hexahydrate,
0.1 M TRIS hydrochloride pH 8.5,
30% w/v Polyethylene glycol 4,000
Crystal Properties Matthews coefficient Solvent content 2.16 43.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.179 α = 90 b = 94.419 β = 90 c = 238.359 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 59.83 96.8 0.092 0.99 8.9 5.1 513816
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.23 0.42 0.876 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1X1V 1.16 55.866 513693 25278 96.663 0.182 0.1815 0.1902 0.1962 0.2038 14.413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.228 0.246 -0.475
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.264 r_dihedral_angle_4_deg 12.971 r_dihedral_angle_3_deg 9.545 r_dihedral_angle_1_deg 7.071 r_lrange_it 4.432 r_lrange_other 4.431 r_angle_refined_deg 1.974 r_scangle_it 1.927 r_scangle_other 1.927 r_angle_other_deg 1.573
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.264 r_dihedral_angle_4_deg 12.971 r_dihedral_angle_3_deg 9.545 r_dihedral_angle_1_deg 7.071 r_lrange_it 4.432 r_lrange_other 4.431 r_angle_refined_deg 1.974 r_scangle_it 1.927 r_scangle_other 1.927 r_angle_other_deg 1.573 r_scbond_it 1.302 r_scbond_other 1.302 r_mcangle_other 1.084 r_mcangle_it 1.083 r_mcbond_it 0.731 r_mcbond_other 0.729 r_symmetry_nbd_refined 0.28 r_nbd_other 0.231 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.167 r_nbd_refined 0.162 r_symmetry_xyhbond_nbd_refined 0.149 r_symmetry_xyhbond_nbd_other 0.138 r_xyhbond_nbd_refined 0.127 r_ncsr_local_group_6 0.108 r_ncsr_local_group_31 0.107 r_ncsr_local_group_3 0.106 r_ncsr_local_group_59 0.105 r_ncsr_local_group_40 0.104 r_chiral_restr 0.103 r_ncsr_local_group_10 0.103 r_ncsr_local_group_34 0.103 r_ncsr_local_group_52 0.103 r_ncsr_local_group_38 0.102 r_ncsr_local_group_56 0.102 r_symmetry_nbtor_other 0.101 r_ncsr_local_group_17 0.101 r_ncsr_local_group_66 0.101 r_ncsr_local_group_12 0.1 r_ncsr_local_group_14 0.1 r_ncsr_local_group_25 0.1 r_ncsr_local_group_44 0.1 r_ncsr_local_group_1 0.099 r_ncsr_local_group_5 0.098 r_ncsr_local_group_39 0.098 r_ncsr_local_group_47 0.098 r_ncsr_local_group_29 0.097 r_ncsr_local_group_42 0.097 r_ncsr_local_group_57 0.097 r_ncsr_local_group_8 0.096 r_ncsr_local_group_22 0.096 r_ncsr_local_group_51 0.096 r_ncsr_local_group_19 0.094 r_ncsr_local_group_21 0.094 r_ncsr_local_group_36 0.094 r_ncsr_local_group_16 0.093 r_ncsr_local_group_63 0.093 r_ncsr_local_group_20 0.091 r_ncsr_local_group_54 0.091 r_ncsr_local_group_24 0.09 r_ncsr_local_group_49 0.09 r_ncsr_local_group_61 0.09 r_ncsr_local_group_27 0.088 r_ncsr_local_group_64 0.087 r_ncsr_local_group_37 0.081 r_ncsr_local_group_46 0.081 r_ncsr_local_group_50 0.081 r_ncsr_local_group_18 0.079 r_ncsr_local_group_33 0.078 r_ncsr_local_group_41 0.074 r_ncsr_local_group_43 0.074 r_ncsr_local_group_48 0.074 r_ncsr_local_group_9 0.073 r_ncsr_local_group_7 0.072 r_ncsr_local_group_35 0.071 r_ncsr_local_group_58 0.069 r_ncsr_local_group_15 0.067 r_ncsr_local_group_26 0.066 r_ncsr_local_group_30 0.065 r_ncsr_local_group_53 0.065 r_ncsr_local_group_28 0.063 r_ncsr_local_group_13 0.062 r_ncsr_local_group_32 0.061 r_ncsr_local_group_45 0.061 r_ncsr_local_group_62 0.061 r_ncsr_local_group_11 0.06 r_ncsr_local_group_2 0.059 r_ncsr_local_group_23 0.058 r_ncsr_local_group_4 0.057 r_ncsr_local_group_65 0.055 r_ncsr_local_group_60 0.051 r_ncsr_local_group_55 0.048 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12444 Nucleic Acid Atoms Solvent Atoms 1358 Heterogen Atoms 179
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing