7UWY
NMR solution structure of the De novo designed small beta-barrel protein 29_bp_sh3
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1.25 mM [U-13C; U-15N] 29_bp_sh3, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide | 95% H2O/5% D2O | 132 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 600 |
2 | 3D 1H-13C NOESY aliphatic | 1.25 mM [U-13C; U-15N] 29_bp_sh3, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide | 95% H2O/5% D2O | 132 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 600 |
3 | 3D 1H-13C NOESY aromatic | 1.25 mM [U-13C; U-15N] 29_bp_sh3, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % w/v sodium azide | 95% H2O/5% D2O | 132 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA | |
molecular dynamics | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 3.6 | Bruker Biospin |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | XEASY | Bartels et al. | |
4 | chemical shift assignment | GARANT | Bartels, Guntert, Billeter and Wuthrich | |
5 | refinement | CYANA | 3.98.13 | Guntert, Mumenthaler and Wuthrich |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
8 | structure calculation | CYANA | 3.98.13 | Guntert, Mumenthaler and Wuthrich |
9 | geometry optimization | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |