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Product of 14mer primer with activated G monomer diastereomer 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6C8O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293.15 50 mM PIPES pH 7.0, 65 mM Magnesium chloride, 1 mM Cobalt (III) Hexamine chloride, 26% v/v (+/-)-2-Methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.29 46.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.873 α = 90 b = 42.873 β = 90 c = 82.763 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD ADSC QUANTUM 315r 2021-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.9 0.079 0.083 0.026 0.993 25.9 10.2 5553
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 0.527 0.556 0.175 0.935 4.2 9.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6C8O 2.1 41.416 5545 291 99.659 0.203 0.1991 0.2065 0.2818 0.2915 23.632
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.004 -0.002 -0.004 0.011
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 5.8 r_lrange_other 5.773 r_angle_other_deg 3.49 r_scangle_it 3.041 r_scangle_other 3.039 r_angle_refined_deg 2.706 r_scbond_it 2.14 r_scbond_other 2.139 r_chiral_restr_other 1.604 r_symmetry_nbtor_other 0.26
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 5.8 r_lrange_other 5.773 r_angle_other_deg 3.49 r_scangle_it 3.041 r_scangle_other 3.039 r_angle_refined_deg 2.706 r_scbond_it 2.14 r_scbond_other 2.139 r_chiral_restr_other 1.604 r_symmetry_nbtor_other 0.26 r_symmetry_nbd_other 0.246 r_nbtor_refined 0.242 r_nbd_other 0.21 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.194 r_symmetry_nbd_refined 0.191 r_nbd_refined 0.142 r_symmetry_xyhbond_nbd_refined 0.136 r_metal_ion_refined 0.068 r_bond_refined_d 0.038 r_bond_other_d 0.025 r_gen_planes_refined 0.012 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 424 Solvent Atoms 54 Heterogen Atoms 283
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing