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Product of 13mer primer with activated G monomer diastereomer 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6C8O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293.15 0.2 M Ammonium acetate, 0.1 M BIS-TRIS pH 6.5, 45% v/v (+/-)-2-Methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.25 45.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.741 α = 90 b = 42.741 β = 90 c = 83.28 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD ADSC QUANTUM 315r 2021-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 0.089 0.094 0.03 1 19.4 9.9 10199
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.348 0.376 0.139 0.989 2.7 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6C8O 1.701 41.675 9027 469 88.491 0.191 0.1879 0.1941 0.2399 0.2484 15.893
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.005 0.01 -0.031
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 7.786 r_lrange_other 7.776 r_scangle_it 3.691 r_scangle_other 3.689 r_angle_other_deg 3.509 r_angle_refined_deg 3.256 r_scbond_it 2.3 r_scbond_other 2.299 r_chiral_restr_other 1.478 r_symmetry_nbtor_other 0.294
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 7.786 r_lrange_other 7.776 r_scangle_it 3.691 r_scangle_other 3.689 r_angle_other_deg 3.509 r_angle_refined_deg 3.256 r_scbond_it 2.3 r_scbond_other 2.299 r_chiral_restr_other 1.478 r_symmetry_nbtor_other 0.294 r_symmetry_nbd_refined 0.287 r_nbtor_refined 0.25 r_symmetry_nbd_other 0.239 r_chiral_restr 0.197 r_nbd_other 0.188 r_symmetry_xyhbond_nbd_refined 0.185 r_xyhbond_nbd_refined 0.14 r_nbd_refined 0.124 r_metal_ion_refined 0.079 r_bond_refined_d 0.033 r_bond_other_d 0.03 r_gen_planes_refined 0.018 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 378 Solvent Atoms 107 Heterogen Atoms 327
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing