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Cryo-EM structure of human Anion Exchanger 1 bound to Niflumic Acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YZF
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.974 r_dihedral_angle_4_deg 14.594 r_dihedral_angle_3_deg 14.207 r_lrange_it 9.621 r_lrange_other 9.621 r_mcangle_it 5.018 r_mcangle_other 5.018 r_dihedral_angle_1_deg 4.903 r_scangle_it 4.282 r_scangle_other 4.281
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.974 r_dihedral_angle_4_deg 14.594 r_dihedral_angle_3_deg 14.207 r_lrange_it 9.621 r_lrange_other 9.621 r_mcangle_it 5.018 r_mcangle_other 5.018 r_dihedral_angle_1_deg 4.903 r_scangle_it 4.282 r_scangle_other 4.281 r_mcbond_other 2.86 r_mcbond_it 2.859 r_scbond_it 2.369 r_scbond_other 2.369 r_angle_other_deg 2.223 r_angle_refined_deg 1.247 r_symmetry_nbd_other 0.195 r_nbd_refined 0.167 r_nbtor_refined 0.155 r_xyhbond_nbd_refined 0.115 r_symmetry_nbtor_other 0.067 r_symmetry_xyhbond_nbd_other 0.056 r_chiral_restr 0.047 r_bond_other_d 0.032 r_gen_planes_other 0.009 r_gen_planes_refined 0.006 r_bond_refined_d 0.003
Sample Dimeric anion exchanger 1 (SLC4A1)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details Blot force 3 for 3-5 seconds was used and subsequent grids were screened for ice thickness prior to data collection
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 79981 Reported Resolution (Å) 3.18 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (4YZF) Refinement Space RECIPROCAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 59.99
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 64000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC IMAGE ACQUISITION Leginon CTF CORRECTION cryoSPARC MODEL FITTING UCSF ChimeraX INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC MODEL REFINEMENT REFMAC servalcat
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2977492