X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6MI0 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.1298Na-citrate tribasic dehydrate, PEG 8,000, dodecyltrimethylammonium chloride
Crystal Properties
Matthews coefficientSolvent content
2.3547.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.21α = 90
b = 206.16β = 114.09
c = 81.43γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELCS-PAD CXI-1Focussing mirrors2021-06-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-G1.000APS21-ID-G

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5574.45990.0650.99813.47.167008
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.552.6299.90.6370.962.27.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6mi02.5574.4567008379299.030.20730.20450.2458RANDOM54.83
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.53-0.240.370.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.792
r_dihedral_angle_3_deg17.175
r_dihedral_angle_4_deg16.566
r_dihedral_angle_1_deg6.677
r_rigid_bond_restr6.01
r_angle_other_deg1.421
r_angle_refined_deg1.265
r_chiral_restr0.064
r_gen_planes_other0.016
r_gen_planes_refined0.013
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.792
r_dihedral_angle_3_deg17.175
r_dihedral_angle_4_deg16.566
r_dihedral_angle_1_deg6.677
r_rigid_bond_restr6.01
r_angle_other_deg1.421
r_angle_refined_deg1.265
r_chiral_restr0.064
r_gen_planes_other0.016
r_gen_planes_refined0.013
r_bond_other_d0.009
r_bond_refined_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14130
Nucleic Acid Atoms
Solvent Atoms341
Heterogen Atoms296

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
Aimlessdata scaling
PHASERphasing