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Crystal structure of Fab containing a fluorescent noncanonical amino acid with blocked excited state proton transfer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BJZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 283 27-33% PEG 3350, 0.1 M Citric acid/Sodium citrate pH 3.0-4.0
Crystal Properties Matthews coefficient Solvent content 2.04 39.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.174 α = 90 b = 59.811 β = 96.09 c = 73.043 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.98 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 72.63 94.1 0.133 0.156 0.081 4.2 3.5 21470
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 66.1 0.411 0.492 0.266 0.782 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6bjz 2.09 72.63 20380 1090 93.61 0.189 0.1855 0.1913 0.2533 0.2529 RANDOM 30.525
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.12 0.11 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.894 r_dihedral_angle_4_deg 20.465 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 7.555 r_angle_refined_deg 1.803 r_angle_other_deg 1.009 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_bond_other_d 0.002 r_gen_planes_refined 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.894 r_dihedral_angle_4_deg 20.465 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 7.555 r_angle_refined_deg 1.803 r_angle_other_deg 1.009 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3266 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction