7RZY

CryoEM structure of Vibrio cholerae transposon Tn6677 AAA+ ATPase TnsC


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.836
r_dihedral_angle_3_deg14.651
r_dihedral_angle_4_deg11.181
r_dihedral_angle_1_deg6.588
r_long_range_B_refined2.546
r_long_range_B_other2.546
r_angle_refined_deg1.302
r_angle_other_deg0.997
r_mcangle_it0.939
r_mcangle_other0.939
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.836
r_dihedral_angle_3_deg14.651
r_dihedral_angle_4_deg11.181
r_dihedral_angle_1_deg6.588
r_long_range_B_refined2.546
r_long_range_B_other2.546
r_angle_refined_deg1.302
r_angle_other_deg0.997
r_mcangle_it0.939
r_mcangle_other0.939
r_mcbond_it0.489
r_mcbond_other0.489
r_scangle_other0.368
r_scbond_it0.143
r_scbond_other0.143
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_gen_planes_other0.002
r_bond_other_d0.001
r_chiral_restr
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
VchTnsC
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles109000
Reported Resolution (Å)3.5
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC7
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement ProtocolBACKBONE TRACE
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)25
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS0.001
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification65000
Calibrated Magnification65000
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
IMAGE ACQUISITIONLeginon
CTF CORRECTIONRELION3.1
INITIAL EULER ASSIGNMENTRELION
FINAL EULER ASSIGNMENTRELION
RECONSTRUCTIONRELION
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION