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Amyloid-related segment of alphaB-crystallin residues 90-100 with G95W mutation, bromo derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 diammonium phosphate, methyl-2,4-pentandiol
Crystal Properties Matthews coefficient Solvent content 1.76 30.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.93 α = 90 b = 36.93 β = 90 c = 24.9 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2020-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.92004 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.996 31.982 99.7 0.097 0.1 0.999 14.9 19.594 1372 52.814
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 1.794 1.843 0.657 1.61 19.067
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.996 31.982 1371 142 99.637 0.297 0.2933 0.3064 0.3381 0.3828 59.927
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 15.073 15.073 -30.146
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.42 r_dihedral_angle_3_deg 16.269 r_lrange_it 13.121 r_lrange_other 13.085 r_mcangle_it 9.869 r_mcangle_other 9.823 r_scangle_it 9.156 r_scangle_other 9.143 r_dihedral_angle_1_deg 8.632 r_mcbond_other 6.554
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.42 r_dihedral_angle_3_deg 16.269 r_lrange_it 13.121 r_lrange_other 13.085 r_mcangle_it 9.869 r_mcangle_other 9.823 r_scangle_it 9.156 r_scangle_other 9.143 r_dihedral_angle_1_deg 8.632 r_mcbond_other 6.554 r_mcbond_it 6.53 r_scbond_it 5.908 r_scbond_other 5.851 r_angle_refined_deg 1.677 r_angle_other_deg 1.007 r_nbd_other 0.272 r_symmetry_xyhbond_nbd_refined 0.255 r_symmetry_nbd_refined 0.215 r_symmetry_nbd_other 0.194 r_nbd_refined 0.187 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.175 r_symmetry_nbtor_other 0.158 r_chiral_restr 0.097 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_xyhbond_nbd_other 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 188 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling MLPHARE phasing DM phasing PDB_EXTRACT data extraction