7QYL

ATAD2 in complex with FragLite23

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DAI

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.521	α = 90
b = 79.521	β = 90
c = 137.408	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.976	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.44	68.87	99.9	0.058	0.06	0.018	1	20.5	19.6		47120

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.44	1.47			3.99	4.413	1.868	0.337		10.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.44	68.87	47049	2316	99.79	0.221	0.22	0.2437	33.702

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.477	-0.238		-0.477		1.547

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.904
r_dihedral_angle_3_deg	15.021
r_dihedral_angle_4_deg	12.43
r_lrange_it	9.014
r_lrange_other	8.992
r_scangle_other	7.131
r_scangle_it	7.112
r_scbond_it	4.967
r_scbond_other	4.962
r_dihedral_angle_1_deg	4.496
r_mcangle_other	4.078
r_mcangle_it	4.076
r_mcbond_it	2.904
r_mcbond_other	2.899
r_angle_refined_deg	2.121
r_angle_other_deg	1.487
r_xyhbond_nbd_refined	0.235
r_symmetry_xyhbond_nbd_refined	0.233
r_symmetry_xyhbond_nbd_other	0.232
r_nbd_refined	0.231
r_nbd_other	0.197
r_symmetry_nbd_other	0.178
r_nbtor_refined	0.178
r_symmetry_nbd_refined	0.172
r_chiral_restr	0.105
r_xyhbond_nbd_other	0.093
r_symmetry_nbtor_other	0.083
r_bond_refined_d	0.015
r_gen_planes_refined	0.011
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	127
Heterogen Atoms	53

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing