7QNH

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND GLYCEROL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5295.1550.64 mM Sodium acetate trihydrate, pH 4.5; 15 % (w/v) PEG 3350; 200 mM sodium formate
Crystal Properties
Matthews coefficientSolvent content
2.3748.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.539α = 90
b = 54.647β = 103.405
c = 106.562γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELBruker PHOTON II2021-04-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.251.88399.80.0820.9885.31.923981314.11
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2799.80.2920.851.91.94

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM2.251.88339804196299.7190.2110.20950.232421.805
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.9980.736-1.1012.468
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.978
r_dihedral_angle_4_deg17.69
r_dihedral_angle_3_deg13.95
r_dihedral_angle_1_deg7.104
r_lrange_it2.99
r_lrange_other2.978
r_angle_other_deg2.331
r_scangle_it1.709
r_scangle_other1.709
r_angle_refined_deg1.499
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.978
r_dihedral_angle_4_deg17.69
r_dihedral_angle_3_deg13.95
r_dihedral_angle_1_deg7.104
r_lrange_it2.99
r_lrange_other2.978
r_angle_other_deg2.331
r_scangle_it1.709
r_scangle_other1.709
r_angle_refined_deg1.499
r_mcangle_it1.344
r_mcangle_other1.344
r_scbond_it1.044
r_scbond_other1.044
r_mcbond_it0.846
r_mcbond_other0.845
r_nbd_other0.289
r_symmetry_nbd_other0.217
r_nbd_refined0.203
r_symmetry_nbd_refined0.179
r_xyhbond_nbd_refined0.155
r_nbtor_refined0.154
r_symmetry_xyhbond_nbd_other0.077
r_ncsr_local_group_10.076
r_chiral_restr0.069
r_symmetry_nbtor_other0.062
r_symmetry_xyhbond_nbd_refined0.041
r_bond_other_d0.036
r_bond_refined_d0.008
r_gen_planes_other0.008
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5684
Nucleic Acid Atoms
Solvent Atoms176
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
PROTEUM PLUSdata reduction
Aimlessdata scaling
REFMACphasing