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Beta-lactoglobulin mutant FAW (I56F/L39A/M107W) in complex with desipramine (FAW-DSM#1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.20 M (NH4)2SO4, 0.5 M Tris-HCl pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.667 α = 90 b = 70.145 β = 90 c = 179.018 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2019-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91840 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.45 99.2 0.074 0.999 14.42 5.52 32842
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 1.191 0.851
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 1.8 45.45 32839 1000 99.229 0.184 0.1829 0.1923 0.2206 0.2296 44.116
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.279 4.523 -2.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.381 r_lrange_other 18.511 r_lrange_it 18.452 r_scangle_it 17.498 r_scangle_other 17.494 r_scbond_it 15.684 r_scbond_other 15.678 r_dihedral_angle_3_deg 13.803 r_dihedral_angle_4_deg 9.852 r_mcangle_other 9.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.381 r_lrange_other 18.511 r_lrange_it 18.452 r_scangle_it 17.498 r_scangle_other 17.494 r_scbond_it 15.684 r_scbond_other 15.678 r_dihedral_angle_3_deg 13.803 r_dihedral_angle_4_deg 9.852 r_mcangle_other 9.73 r_mcangle_it 9.729 r_mcbond_it 9.255 r_mcbond_other 9.244 r_dihedral_angle_1_deg 6.867 r_angle_refined_deg 1.68 r_angle_other_deg 1.452 r_nbd_other 0.252 r_symmetry_nbd_refined 0.246 r_nbd_refined 0.212 r_symmetry_nbd_other 0.2 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.17 r_ncsr_local_group_1 0.158 r_symmetry_xyhbond_nbd_refined 0.129 r_chiral_restr 0.086 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_symmetry_xyhbond_nbd_other 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2443 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing