☰ Navigation Tabs
mycolic acid methyltransferase Hma (MmaA4) from Mycobac-terium tuberculosis in complex with ZT585
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FK7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 285 BisTris 50 mM,
PEG 3350 4% (w/v),
pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.64 53.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.11 α = 90 b = 57.11 β = 90 c = 204.46 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.95373 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 49.46 98.3 0.175 0.98 7.2 5.9 33526
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 99.9 1.299 0.531 1.4 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2FK7 1.85 49.46 31808 1718 98.21 0.19142 0.18937 0.2 0.22933 0.2419 RANDOM 50.812
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.17 0.35 -1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.261 r_dihedral_angle_4_deg 17.653 r_dihedral_angle_3_deg 12.228 r_long_range_B_refined 7.409 r_long_range_B_other 7.408 r_scangle_other 6.268 r_dihedral_angle_1_deg 6.142 r_scbond_it 5.136 r_scbond_other 5.134 r_mcangle_it 4.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.261 r_dihedral_angle_4_deg 17.653 r_dihedral_angle_3_deg 12.228 r_long_range_B_refined 7.409 r_long_range_B_other 7.408 r_scangle_other 6.268 r_dihedral_angle_1_deg 6.142 r_scbond_it 5.136 r_scbond_other 5.134 r_mcangle_it 4.224 r_mcangle_other 4.223 r_mcbond_it 3.842 r_mcbond_other 3.842 r_angle_other_deg 1.224 r_angle_refined_deg 1.199 r_chiral_restr 0.058 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2287 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling XSCALE data scaling REFMAC phasing