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mycolic acid methyltransferase Hma (MmaA4) from Mycobac-terium tuberculosis in complex with ZT320
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FK7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 285 BisTris 50 mM,
PEG 3350 4% (w/v),
pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.66 53.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.022 α = 90 b = 57.022 β = 90 c = 207.345 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976251 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 57.02 100 0.081 0.085 0.998 16.15 11.39 31853
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.02 100 0.909 0.951 0.892 2.55 11.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2FK7 1.89 49.38 30494 1645 99.78 0.18771 0.18557 0.2005 0.22809 0.2445 RANDOM 66.131
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.22 0.44 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.377 r_dihedral_angle_4_deg 22.575 r_dihedral_angle_3_deg 13.018 r_long_range_B_other 9.48 r_long_range_B_refined 9.479 r_scangle_other 8.92 r_scbond_it 7.139 r_scbond_other 7.136 r_mcangle_other 5.959 r_mcangle_it 5.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.377 r_dihedral_angle_4_deg 22.575 r_dihedral_angle_3_deg 13.018 r_long_range_B_other 9.48 r_long_range_B_refined 9.479 r_scangle_other 8.92 r_scbond_it 7.139 r_scbond_other 7.136 r_mcangle_other 5.959 r_mcangle_it 5.956 r_dihedral_angle_1_deg 5.754 r_mcbond_it 5.487 r_mcbond_other 5.482 r_angle_other_deg 1.236 r_angle_refined_deg 1.225 r_chiral_restr 0.057 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2285 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling XSCALE data scaling