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Crystal structure of p38alpha C162S in complex with CAS2094511-69-8, P 1 21 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QUE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 27% PEG 3350, 0,1M BIS-TRIS pH 6.8
Crystal Properties Matthews coefficient Solvent content 2.3 46.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.141 α = 90 b = 68.072 β = 94.78 c = 79.98 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Eliptically bent mirror 2020-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 79.702 100 0.057 16 5.8 44958 26.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.92 100 0.453 4.4 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3que 2.154 79.702 38816 2015 99.286 0.207 0.2053 0.2107 0.2395 0.2421 56.897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.182 0.263 -1.308 1.426
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.907 r_dihedral_angle_6_deg 12.587 r_lrange_it 5.488 r_dihedral_angle_1_deg 5.474 r_lrange_other 5.464 r_dihedral_angle_2_deg 3.117 r_mcangle_it 2.919 r_mcangle_other 2.918 r_scangle_it 2.593 r_scangle_other 2.593
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.907 r_dihedral_angle_6_deg 12.587 r_lrange_it 5.488 r_dihedral_angle_1_deg 5.474 r_lrange_other 5.464 r_dihedral_angle_2_deg 3.117 r_mcangle_it 2.919 r_mcangle_other 2.918 r_scangle_it 2.593 r_scangle_other 2.593 r_mcbond_it 1.642 r_mcbond_other 1.642 r_scbond_it 1.453 r_scbond_other 1.453 r_angle_refined_deg 0.934 r_angle_other_deg 0.319 r_symmetry_xyhbond_nbd_refined 0.208 r_nbd_refined 0.189 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.172 r_nbd_other 0.172 r_symmetry_nbd_refined 0.166 r_xyhbond_nbd_refined 0.149 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.041 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5435 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PDB_EXTRACT data extraction PHASER phasing