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Factor XII Fibronectin type II (FXII FnII) domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other FXII FnII from unpublished structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 292.15 0.1 M Sodium Cacodylate, 25 % (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.66 25.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.82 α = 90 b = 45.82 β = 90 c = 53.5 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.2821 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 34.8 100 0.999 26.6 10.2 7469
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.67 0.983
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT FXII FnII from unpublished structure 1.64 34.8 7036 398 99.97 0.1713 0.1696 0.1825 0.2042 0.2185 RANDOM 22.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.53 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.865 r_dihedral_angle_4_deg 17.113 r_dihedral_angle_3_deg 15.35 r_dihedral_angle_1_deg 6.197 r_angle_refined_deg 1.555 r_angle_other_deg 0.981 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.865 r_dihedral_angle_4_deg 17.113 r_dihedral_angle_3_deg 15.35 r_dihedral_angle_1_deg 6.197 r_angle_refined_deg 1.555 r_angle_other_deg 0.981 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 450 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 4
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction PHASER phasing