7POA

An Irreversible, Promiscuous and Highly Thermostable Claisen-Condensation Biocatalyst Drives the Synthesis of Substituted Pyrroles


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3TQX 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293.1530 mM sodium nitrate, 30 mM sodium phosphate, 30 mM ammonium sulfate, 100 mM Hepes/MOPS pH 7.5, 12.5 % (v/v) MPD, 12.5 % (w/v) PEG 1000 and 12.5 % (w/v) PEG 3350)
Crystal Properties
Matthews coefficientSolvent content
2.1342.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.41α = 64.74
b = 63.89β = 70.5
c = 65.91γ = 68.12
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9796DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.655.63496.20.0510.0620.0340.99715.66.597563
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.631.1611.4060.7770.6046.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3TQX1.655.63497559480396.160.1720.16860.239528.368
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.005-1.814-0.5371.9991.814-2.106
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.699
r_dihedral_angle_4_deg14.828
r_dihedral_angle_3_deg14.629
r_scangle_it7.59
r_scangle_other7.546
r_lrange_it7.097
r_lrange_other7.096
r_dihedral_angle_1_deg6.764
r_scbond_it6.648
r_scbond_other6.624
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.699
r_dihedral_angle_4_deg14.828
r_dihedral_angle_3_deg14.629
r_scangle_it7.59
r_scangle_other7.546
r_lrange_it7.097
r_lrange_other7.096
r_dihedral_angle_1_deg6.764
r_scbond_it6.648
r_scbond_other6.624
r_rigid_bond_restr6.166
r_mcangle_it5.349
r_mcangle_other5.349
r_mcbond_it4.558
r_mcbond_other4.556
r_angle_refined_deg1.765
r_angle_other_deg1.457
r_symmetry_xyhbond_nbd_other0.356
r_symmetry_nbd_refined0.332
r_nbd_refined0.211
r_symmetry_nbd_other0.197
r_nbd_other0.188
r_xyhbond_nbd_refined0.176
r_nbtor_refined0.167
r_symmetry_xyhbond_nbd_refined0.166
r_chiral_restr0.092
r_symmetry_nbtor_other0.082
r_ncsr_local_group_10.067
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.005
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6135
Nucleic Acid Atoms
Solvent Atoms488
Heterogen Atoms51

Software

Software
Software NamePurpose
REFMACrefinement
PHASERphasing
Aimlessdata scaling
pointlessdata scaling
Cootmodel building
BUCCANEERmodel building
MolProbitymodel building
xia2data scaling
XDSdata reduction