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Structure of light-adapted AsLOV2 Q513L
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V0U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 0.1 M sodium acetate pH 4.6-5.0, 6-8% (w/v) PEG 4000, 30% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 1.96 37.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.28 α = 90 b = 56.04 β = 90 c = 66.77 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.979 42.925 99.7 0.999 13.6 6.1 76537
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.98 1.04 7.9 0.28 0.7 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2V0U 0.979 42.925 76537 3827 99.633 0.113 0.1121 0.1121 0.1357 0.1351 15.108
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 0.415 -0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.683 r_dihedral_angle_4_deg 20.164 r_dihedral_angle_3_deg 12.55 r_dihedral_angle_1_deg 6.951 r_lrange_it 3.369 r_lrange_other 3.26 r_scangle_it 2.792 r_scangle_other 2.791 r_rigid_bond_restr 2.666 r_scbond_it 2.392
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.683 r_dihedral_angle_4_deg 20.164 r_dihedral_angle_3_deg 12.55 r_dihedral_angle_1_deg 6.951 r_lrange_it 3.369 r_lrange_other 3.26 r_scangle_it 2.792 r_scangle_other 2.791 r_rigid_bond_restr 2.666 r_scbond_it 2.392 r_scbond_other 2.392 r_angle_refined_deg 2.036 r_mcangle_it 1.874 r_mcangle_other 1.873 r_angle_other_deg 1.509 r_mcbond_other 1.399 r_mcbond_it 1.398 r_nbd_refined 0.396 r_symmetry_nbd_refined 0.272 r_symmetry_nbd_other 0.224 r_xyhbond_nbd_refined 0.218 r_symmetry_xyhbond_nbd_refined 0.218 r_nbd_other 0.217 r_nbtor_refined 0.18 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.089 r_xyhbond_nbd_other 0.053 r_symmetry_xyhbond_nbd_other 0.049 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1185 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing