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URATE OXIDASE WITH 8-AZAXANTHINE UNDER 310 MPA PRESSURE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OP9 PDB 4OP9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 7.5 298 20 MG/ML URATE OXIDASE, 8-AZAXANTHINE CONCENTRATION IN EXCESS, 50 MM TRIS/ACETATE, 8% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.89 57.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.132 α = 90 b = 95.398 β = 90 c = 104.668 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD RAYONIX SX-165mm mirrors 2019-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE CRISTAL 0.58183 SOLEIL CRISTAL
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.506 96 0.139 7 3.4 15109
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 97.2 0.635 0.635 1.1 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB 4OP9 2.4 20 13313 693 88.4 0.192 0.188 0.1949 0.27 0.2704 RANDOM 49.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.85 -0.46 -2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.597 r_dihedral_angle_3_deg 17.044 r_dihedral_angle_4_deg 14.645 r_dihedral_angle_1_deg 7.855 r_angle_other_deg 3.809 r_angle_refined_deg 1.461 r_chiral_restr 0.072 r_bond_refined_d 0.013 r_gen_planes_other 0.011 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.597 r_dihedral_angle_3_deg 17.044 r_dihedral_angle_4_deg 14.645 r_dihedral_angle_1_deg 7.855 r_angle_other_deg 3.809 r_angle_refined_deg 1.461 r_chiral_restr 0.072 r_bond_refined_d 0.013 r_gen_planes_other 0.011 r_gen_planes_refined 0.01 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2362 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing PDB_EXTRACT data extraction