7OZF

FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 19.


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5A4C 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.72910.185M ammonium sulfate, 20% v/v ethylene glycol, 17% w/v PEG 8000, 0.1M PCPT
Crystal Properties
Matthews coefficientSolvent content
2.754.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 208.32α = 90
b = 57.77β = 107.17
c = 65.94γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9159DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.826398.70.0430.050.0260.99911.33.4225749
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.821.870.8711.0670.6090.6251.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5A4C1.826366490341198.6730.2060.2040.242546.193
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.947-0.8083.919-1.236
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.602
r_dihedral_angle_4_deg15.724
r_dihedral_angle_3_deg13.174
r_lrange_it7.145
r_lrange_other7.139
r_dihedral_angle_1_deg6.228
r_scangle_it5.527
r_scangle_other5.526
r_mcangle_it4.339
r_mcangle_other4.339
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.602
r_dihedral_angle_4_deg15.724
r_dihedral_angle_3_deg13.174
r_lrange_it7.145
r_lrange_other7.139
r_dihedral_angle_1_deg6.228
r_scangle_it5.527
r_scangle_other5.526
r_mcangle_it4.339
r_mcangle_other4.339
r_scbond_it3.574
r_scbond_other3.574
r_mcbond_it3.064
r_mcbond_other3.064
r_angle_refined_deg1.447
r_angle_other_deg1.253
r_nbd_refined0.195
r_nbd_other0.173
r_symmetry_nbd_other0.172
r_nbtor_refined0.158
r_symmetry_nbd_refined0.157
r_symmetry_xyhbond_nbd_refined0.15
r_xyhbond_nbd_refined0.142
r_symmetry_nbtor_other0.075
r_chiral_restr0.062
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4421
Nucleic Acid Atoms
Solvent Atoms183
Heterogen Atoms77

Software

Software
Software NamePurpose
xia2data reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement