☰ Navigation Tabs
human DEPTOR in a complex with mutant human mTORC1 A1459P
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BCX
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.674 r_dihedral_angle_4_deg 20.788 r_dihedral_angle_3_deg 14.551 r_lrange_it 13.191 r_lrange_other 13.191 r_dihedral_angle_1_deg 9.745 r_mcangle_it 6.585 r_mcangle_other 6.585 r_scangle_it 5.87 r_scangle_other 5.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.674 r_dihedral_angle_4_deg 20.788 r_dihedral_angle_3_deg 14.551 r_lrange_it 13.191 r_lrange_other 13.191 r_dihedral_angle_1_deg 9.745 r_mcangle_it 6.585 r_mcangle_other 6.585 r_scangle_it 5.87 r_scangle_other 5.87 r_mcbond_it 4.031 r_mcbond_other 4.031 r_scbond_it 3.334 r_scbond_other 3.334 r_angle_refined_deg 1.76 r_angle_other_deg 1.34 r_symmetry_xyhbond_nbd_refined 0.209 r_ext_dist_refined_d 0.199 r_nbd_refined 0.199 r_symmetry_nbd_refined 0.196 r_nbd_other 0.196 r_symmetry_nbd_other 0.156 r_nbtor_refined 0.156 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.086 r_xyhbond_nbd_refined 0.079 r_bond_other_d 0.032 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.003
Sample COMPLEX OF HUMAN MUTANT MTORC1 A1459P WITH THE INHIBITORY PROTEIN DEPTOR Sample Components mTORC1 with mutant A1459P mTOR DEPTOR
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK I Cryogen Name ETHANE Sample Vitrification Details blotting time of 2 s and a force of -15.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 500000 Reported Resolution (Å) 4.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (6BCX) Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target Correlation Overall B Value 145.7 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 56
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) -1400 Maximum Defocus (nm) -3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING Coot 0.9 MODEL FITTING ISOLDE 1.1 INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION RECONSTRUCTION RELION MODEL REFINEMENT REFMAC 5.8.0272
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 376784