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Bs164 in complex with mannocyclophellitol epoxide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6T7G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Ammonium tartrate pH 6.5 , 14 % PEG 3,350
Crystal Properties Matthews coefficient Solvent content 2.55 51.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.452 α = 92.292 b = 104.426 β = 97.351 c = 170.781 γ = 106.554
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER2 XE 16M 2021-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976284 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 65.87 97.2 0.994 7.6 3.1 438305
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.79 0.302
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6T7G 1.76 65.87 438213 22062 97.15 0.233 0.2314 0.1979 0.2609 0.2259 34.914
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.461 1.673 -0.551 0.165 0.088 -2.376
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.573 r_dihedral_angle_4_deg 20.188 r_dihedral_angle_3_deg 14.339 r_dihedral_angle_1_deg 7.347 r_lrange_it 6.06 r_lrange_other 6.057 r_scangle_it 4.985 r_scangle_other 4.985 r_mcangle_other 3.777 r_mcangle_it 3.776
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.573 r_dihedral_angle_4_deg 20.188 r_dihedral_angle_3_deg 14.339 r_dihedral_angle_1_deg 7.347 r_lrange_it 6.06 r_lrange_other 6.057 r_scangle_it 4.985 r_scangle_other 4.985 r_mcangle_other 3.777 r_mcangle_it 3.776 r_scbond_it 3.433 r_scbond_other 3.433 r_mcbond_it 2.825 r_mcbond_other 2.825 r_angle_other_deg 2.311 r_angle_refined_deg 1.422 r_nbd_other 0.264 r_symmetry_xyhbond_nbd_other 0.221 r_symmetry_nbd_refined 0.212 r_symmetry_nbd_other 0.209 r_nbd_refined 0.2 r_symmetry_xyhbond_nbd_refined 0.194 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.071 r_symmetry_nbtor_other 0.067 r_bond_other_d 0.035 r_xyhbond_nbd_other 0.026 r_gen_planes_other 0.01 r_bond_refined_d 0.008 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31540 Nucleic Acid Atoms Solvent Atoms 2135 Heterogen Atoms 314
Software Software Software Name Purpose REFMAC refinement DIALS data reduction xia2 data scaling REFMAC phasing