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Tankyrase 2 in complex with an inhibitor (OUL220)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OWS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 100 mM Tris pH=8.5, 200mM Lithium Sulphate, 22% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.67 53.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.21 α = 90 b = 98.3 β = 90 c = 118.27 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.89 0.999 19.01 6.7 58597
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.761 0.817
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OWS 1.7 45.428 58597 2930 99.916 0.183 0.1824 0.1898 0.1967 0.2025 31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.045 -2.18 2.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.787 r_dihedral_angle_4_deg 15.286 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 6.703 r_lrange_it 5.047 r_lrange_other 4.939 r_scangle_it 2.992 r_scangle_other 2.976 r_mcangle_it 2.472 r_mcangle_other 2.472
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.787 r_dihedral_angle_4_deg 15.286 r_dihedral_angle_3_deg 12.098 r_dihedral_angle_1_deg 6.703 r_lrange_it 5.047 r_lrange_other 4.939 r_scangle_it 2.992 r_scangle_other 2.976 r_mcangle_it 2.472 r_mcangle_other 2.472 r_scbond_it 1.837 r_scbond_other 1.825 r_mcbond_it 1.524 r_mcbond_other 1.52 r_angle_other_deg 1.217 r_angle_refined_deg 1.216 r_nbd_other 0.197 r_nbd_refined 0.184 r_symmetry_nbd_refined 0.176 r_symmetry_nbd_other 0.167 r_symmetry_xyhbond_nbd_refined 0.167 r_nbtor_refined 0.16 r_xyhbond_nbd_refined 0.117 r_symmetry_nbtor_other 0.069 r_chiral_restr 0.052 r_symmetry_xyhbond_nbd_other 0.012 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3345 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing