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Crystal structure of AP2 FCHO2 chimera
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 289 18% PEG 12000 0.1M Na/K phosphate pH 6.2 0.2M NaCl 4mM DTT in the presence of 3-fold molar excess of IP6.
Crystal Properties Matthews coefficient Solvent content 2.69 54.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.04 α = 90 b = 122.04 β = 90 c = 257.41 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.900 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.88 66.61 99.9 0.104 0.115 0.037 0.998 13.5 9.8 51118 79.944
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.88 2.95 99.9 1.803 2.019 0.649 0.529 1.2 9.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE Phaser 2.88 61.095 51053 2547 99.978 0.187 0.1819 0.1861 0.2734 0.2692 96.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.539 0.269 0.539 -1.747
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.397 r_dihedral_angle_3_deg 20.251 r_dihedral_angle_4_deg 19.128 r_lrange_it 16.976 r_lrange_other 16.976 r_mcangle_it 13.16 r_mcangle_other 13.16 r_scangle_it 12.86 r_scangle_other 12.859 r_mcbond_it 9.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.397 r_dihedral_angle_3_deg 20.251 r_dihedral_angle_4_deg 19.128 r_lrange_it 16.976 r_lrange_other 16.976 r_mcangle_it 13.16 r_mcangle_other 13.16 r_scangle_it 12.86 r_scangle_other 12.859 r_mcbond_it 9.079 r_mcbond_other 9.079 r_scbond_it 8.676 r_scbond_other 8.675 r_dihedral_angle_1_deg 7.769 r_angle_refined_deg 1.606 r_angle_other_deg 1.183 r_symmetry_nbd_refined 0.276 r_nbd_other 0.257 r_nbd_refined 0.224 r_symmetry_xyhbond_nbd_refined 0.214 r_symmetry_nbd_other 0.194 r_xyhbond_nbd_refined 0.186 r_nbtor_refined 0.167 r_symmetry_xyhbond_nbd_other 0.081 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.065 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13621 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing