7OE6

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N4-hydroxycyclohexyl-N2-methyl-5-phenylethyl-furan-2,4-dicarboxamide

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
other		in house structure

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		298	30% PEG 300, 0.1M MES buffer pH6.5

Crystal Properties
Matthews coefficient	Solvent content
2.26	45.64

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 72.007	α = 90
b = 52.532	β = 90
c = 32.14	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RIGAKU SATURN A200		2019-01-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU FR-E+ SUPERBRIGHT	1.54178

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.76	42.44	97.5	0.079	0.997	11.5	3.4		12247

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.76	1.86	99.6		0.467	0.809	2.7	3.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	in house structure	1.762	32.14	12205	617	96.788	0.158	0.1561	0.1893	20.143

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.192			-0.541		0.733

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.218
r_dihedral_angle_4_deg	20.209
r_dihedral_angle_3_deg	12.477
r_lrange_it	7.286
r_lrange_other	6.308
r_dihedral_angle_1_deg	5.184
r_scangle_it	3.106
r_scangle_other	3.104
r_mcangle_other	2.476
r_mcangle_it	2.471
r_scbond_it	1.833
r_scbond_other	1.831
r_mcbond_it	1.418
r_mcbond_other	1.384
r_angle_other_deg	1.226
r_angle_refined_deg	1.187
r_nbd_refined	0.189
r_nbd_other	0.177
r_symmetry_nbd_other	0.167
r_xyhbond_nbd_refined	0.165
r_nbtor_refined	0.163
r_symmetry_nbd_refined	0.148
r_symmetry_xyhbond_nbd_refined	0.119
r_symmetry_nbtor_other	0.079
r_chiral_restr	0.064
r_symmetry_xyhbond_nbd_other	0.028
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	919
Nucleic Acid Atoms
Solvent Atoms	273
Heterogen Atoms	35

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling