7OB2
NMR structure of the antimicrobial RiLK1 peptide in SDS micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 1D | 0.9 mM RiLK1, 150 mM 98% D SDS-d25, 90 % H2O, 10 % 98% D D2O | 90% H2O/10% D2O, SDS | not defined | 4.2 | 1 atm | 298 | Varian 700 Unity Inova 700 |
2 | 2D 1H-1H TOCSY | 0.9 mM RiLK1, 150 mM 98% D SDS-d25, 90 % H2O, 10 % 98% D D2O | 90% H2O/10% D2O, SDS | not defined | 4.2 | 1 atm | 298 | Varian 700 Unity Inova 700 |
3 | 2D 1H-1H NOESY | 0.9 mM RiLK1, 150 mM 98% D SDS-d25, 90 % H2O, 10 % 98% D D2O | 90% H2O/10% D2O, SDS | not defined | 4.2 | 1 atm | 298 | Varian 700 Unity Inova 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | 700 Unity Inova | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | peak picking | CARA | Keller and Wuthrich | |
2 | chemical shift assignment | CARA | Keller and Wuthrich | |
4 | data analysis | CARA | Keller and Wuthrich | |
6 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich |