7O9U

Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
22D 1H-13C HSQC aliphatic0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
32D 1H-13C HSQC aromatic0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
43D 1H-15N NOESY0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
163D 1H-15N NOESY0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 800
53D 1H-15N TOCSY0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
63D 1H-13C NOESY aliphatic0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
73D HNCA0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
83D HN(CO)CA0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
93D HNCO0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
103D HCACO0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
113D HNHA0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
123D HCCH-TOCSY0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
133D HNCACB0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
143D HBHA(CO)NH0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
153D H(CCO)NH0.6 mM [U-100% 13C; U-100% 15N] Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
172D 1H-1H NOESY0.6 mM Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
182D 1H-1H TOCSY0.6 mM Cytochrome c55295% H2O/5% D2O50 mM7.01 atm303Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingTopSpin3.2Bruker Biospin
3data analysisCcpNmr AnalysisCCPN
4peak pickingCcpNmr AnalysisCCPN
5chemical shift assignmentARIA2.3Linge, O'Donoghue and Nilges
6structure calculationCNS1.21Brunger, Adams, Clore, Gros, Nilges and Read
7refinementX-PLOR NIH3.2Schwieters, Kuszewski, Tjandra and Clore