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Trichoderma reesei Cel7A E212Q mutant in complex with lactose.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4C4C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 294 50 mM morpholinoethane sulphonic acid (pH 6.0), 21.25% polyethylene glycol 5000 monomethyl ether, 12.5% glycerol, 5 mM cobalt chloride
Crystal Properties Matthews coefficient Solvent content 2.06 40.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.54 α = 90 b = 82.21 β = 90 c = 110.734 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M KB mirrors 2018-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.979957 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.09 41.77 88.5 0.074 0.081 0.032 0.999 13.3 6.1 137896
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.09 1.13 41.4 0.683 0.82 0.442 0.7 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4C4C 1.09 41.77 131092 6802 88.31 0.1243 0.1234 0.124 0.1425 0.1431 RANDOM 11.287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.23 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.891 r_dihedral_angle_4_deg 19.267 r_dihedral_angle_3_deg 11.023 r_dihedral_angle_1_deg 6.566 r_angle_refined_deg 1.497 r_angle_other_deg 1.201 r_rigid_bond_restr 1.157 r_chiral_restr 0.097 r_bond_refined_d 0.009 r_gen_planes_refined 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.891 r_dihedral_angle_4_deg 19.267 r_dihedral_angle_3_deg 11.023 r_dihedral_angle_1_deg 6.566 r_angle_refined_deg 1.497 r_angle_other_deg 1.201 r_rigid_bond_restr 1.157 r_chiral_restr 0.097 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3224 Nucleic Acid Atoms Solvent Atoms 563 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement REFMAC phasing pointless data processing Aimless data scaling pointless data processing XDS data reduction EDNA data processing MxCuBE data collection