7NS1
S. aureus pepG1 NMR solution structure
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY 300ms | 0.3 mM no PG1S, 50 % v/v no H2O, 50 % v/v DIMETHYL-D6, 98% isoPrOH, 0.01 mM no EDTA | 50%H2O/50%isoPrOH | 0 mM | 4.5 | 1 atm | 303 | Bruker AVANCE III 600 |
6 | 2D NOESY 150ms | 0.3 mM no PG1S, 50 % v/v no H2O, 50 % v/v DIMETHYL-D6, 98% isoPrOH, 0.01 mM no EDTA | 50%H2O/50%isoPrOH | 0 mM | 4.5 | 1 atm | 303 | Bruker AVANCE III 600 |
2 | 2D NOESY 80ms | 0.3 mM no PG1S, 50 % v/v no H2O, 50 % v/v DIMETHYL-D6, 98% isoPrOH, 0.01 mM no EDTA | 50%H2O/50%isoPrOH | 0 mM | 4.5 | 1 atm | 303 | Bruker AVANCE III 600 |
3 | 2D TOCSY 80ms | 0.3 mM no PG1S, 50 % v/v no H2O, 50 % v/v DIMETHYL-D6, 98% isoPrOH, 0.01 mM no EDTA | 50%H2O/50%isoPrOH | 0 mM | 4.5 | 1 atm | 303 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | eefx+tDB potentials | X-PLOR NIH |
torsion angle dynamics | eefx+tDB potentials | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 5 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | 3.1 | Schwieters, Kuszewski, Tjandra and Clore |
2 | structure calculation | X-PLOR NIH | 3.1 | Schwieters, Kuszewski, Tjandra and Clore |
3 | chemical shift assignment | CcpNmr Analysis | 2.4 | Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy: Development of a Software Pipeline. Proteins 59, 687 - 696. |
4 | peak picking | CcpNmr Analysis | 2.4 | Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy: Development of a Software Pipeline. Proteins 59, 687 - 696. |