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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 3-(2-(benzyloxy)phenyl)-5-methyl-1H-1,2,4-triazole
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.23 44.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.311 α = 90 b = 52.646 β = 90 c = 31.89 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2015-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.35 94.9 0.02 0.998 24.1 2.9 15561
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.71 79.4 0.247 0.412 2 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.6 42.35 15490 751 93.981 0.154 0.152 0.1661 0.1875 0.2029 16.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.099 -0.208
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.103 r_dihedral_angle_4_deg 20.87 r_dihedral_angle_3_deg 10.82 r_lrange_it 5.853 r_lrange_other 5.85 r_dihedral_angle_1_deg 4.832 r_scangle_it 1.983 r_scangle_other 1.982 r_angle_other_deg 1.319 r_mcangle_other 1.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.103 r_dihedral_angle_4_deg 20.87 r_dihedral_angle_3_deg 10.82 r_lrange_it 5.853 r_lrange_other 5.85 r_dihedral_angle_1_deg 4.832 r_scangle_it 1.983 r_scangle_other 1.982 r_angle_other_deg 1.319 r_mcangle_other 1.309 r_mcangle_it 1.308 r_angle_refined_deg 1.228 r_scbond_it 1.179 r_scbond_other 1.178 r_mcbond_it 0.79 r_mcbond_other 0.735 r_nbd_refined 0.207 r_nbtor_refined 0.171 r_symmetry_nbd_other 0.164 r_symmetry_nbd_refined 0.155 r_symmetry_xyhbond_nbd_refined 0.151 r_nbd_other 0.145 r_xyhbond_nbd_refined 0.113 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.068 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 926 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling