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Inhibitor Complex with Thrombin Activatable Fibrinolysis inhibitor (TAFIa)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 23% PEG 8000, 200mM Ammonium Citrate, 100 mM MES
Crystal Properties Matthews coefficient Solvent content 2.62 53.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.17 α = 90 b = 95.5 β = 90 c = 157.22 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2011-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.03324 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 37.384 96.2 9.5 3 15499
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE in house model 2.55 37.384 15459 773 95.627 0.257 0.2543 0.2543 0.3156 0.3161 39.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.824 -9.228 4.404
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 21.503 r_dihedral_angle_3_deg 20.003 r_dihedral_angle_1_deg 8.755 r_lrange_it 4.053 r_lrange_other 4.053 r_mcangle_it 2.492 r_mcangle_other 2.491 r_scangle_it 2.333 r_scangle_other 2.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 21.503 r_dihedral_angle_3_deg 20.003 r_dihedral_angle_1_deg 8.755 r_lrange_it 4.053 r_lrange_other 4.053 r_mcangle_it 2.492 r_mcangle_other 2.491 r_scangle_it 2.333 r_scangle_other 2.332 r_angle_refined_deg 1.86 r_mcbond_it 1.481 r_mcbond_other 1.481 r_scbond_it 1.365 r_scbond_other 1.361 r_angle_other_deg 1.263 r_metal_ion_refined 0.253 r_nbd_refined 0.223 r_symmetry_nbd_other 0.204 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.18 r_nbd_other 0.166 r_symmetry_xyhbond_nbd_other 0.094 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3136 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing