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Glutathione-S-transferase GliG in complex with reduced glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.2 M ammonium acetate, 0.1 M bis-tris pH 5.5,
20 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.29 46.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.57 α = 90 b = 85.86 β = 90 c = 345.87 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 48 99.3 0.055 15.6 4.7 116899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 0.574 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7NC3 1.95 30 111020 5843 99.26 0.1705 0.1686 0.1794 0.2073 0.2137 RANDOM 36.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.7 -1.06 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.232 r_dihedral_angle_4_deg 14.248 r_dihedral_angle_3_deg 12.383 r_dihedral_angle_1_deg 5.659 r_angle_refined_deg 1.139 r_angle_other_deg 1.087 r_rigid_bond_restr 0.372 r_chiral_restr 0.045 r_gen_planes_refined 0.003 r_bond_refined_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.232 r_dihedral_angle_4_deg 14.248 r_dihedral_angle_3_deg 12.383 r_dihedral_angle_1_deg 5.659 r_angle_refined_deg 1.139 r_angle_other_deg 1.087 r_rigid_bond_restr 0.372 r_chiral_restr 0.045 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11576 Nucleic Acid Atoms Solvent Atoms 817 Heterogen Atoms 152
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing