7N3M

Co-complex CYP46A1 with 0431 (compound 17)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7LRL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29017.5% PEG 3350, 0.4M Calcium Cl
Crystal Properties
Matthews coefficientSolvent content
2.3342.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.572α = 90
b = 63.717β = 90
c = 125.061γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2012-08-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.30.976ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6984598.740.10915.86.651775
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.6981.730.7641.86

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7LRL1.69844.66951775253298.5830.1660.16420.191822.586
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.811-0.381-0.431
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.849
r_dihedral_angle_4_deg15.846
r_dihedral_angle_3_deg14.345
r_dihedral_angle_1_deg5.876
r_lrange_it4.473
r_lrange_other4.286
r_scangle_it2.697
r_scangle_other2.697
r_angle_refined_deg1.9
r_mcangle_it1.688
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.849
r_dihedral_angle_4_deg15.846
r_dihedral_angle_3_deg14.345
r_dihedral_angle_1_deg5.876
r_lrange_it4.473
r_lrange_other4.286
r_scangle_it2.697
r_scangle_other2.697
r_angle_refined_deg1.9
r_mcangle_it1.688
r_mcangle_other1.688
r_scbond_it1.681
r_scbond_other1.681
r_angle_other_deg1.529
r_mcbond_it1.023
r_mcbond_other1.021
r_nbd_refined0.257
r_xyhbond_nbd_refined0.239
r_nbd_other0.227
r_symmetry_xyhbond_nbd_refined0.203
r_symmetry_nbd_other0.183
r_nbtor_refined0.175
r_symmetry_nbd_refined0.166
r_chiral_restr0.101
r_symmetry_nbtor_other0.081
r_symmetry_xyhbond_nbd_other0.036
r_bond_refined_d0.015
r_gen_planes_refined0.012
r_gen_planes_other0.008
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3525
Nucleic Acid Atoms
Solvent Atoms390
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing