7MQ4
Rules for designing protein fold switches and their implications for the folding code
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3 mM [U-13C; U-15N] Sb1, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 mM | 7.0 | ambient | 283 | Bruker AVANCE 600 |
2 | 3D HNCACB | 0.3 mM [U-13C; U-15N] Sb1, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 mM | 7.0 | ambient | 283 | Bruker AVANCE 600 |
3 | 3D CBCA(CO)NH | 0.3 mM [U-13C; U-15N] Sb1, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 mM | 7.0 | ambient | 283 | Bruker AVANCE 600 |
4 | 3D HNCO | 0.3 mM [U-13C; U-15N] Sb1, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 mM | 7.0 | ambient | 283 | Bruker AVANCE 600 |
5 | 3D HNHA | 0.3 mM [U-13C; U-15N] Sb1, 100 mM potassium phosphate | 95% H2O/5% D2O | 100 mM | 7.0 | ambient | 283 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
CS-ROSETTA | CS-ROSETTA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
2 | structure calculation | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
3 | chemical shift assignment | NMRFAM-SPARKY | NMRFAM | |
4 | peak picking | NMRFAM-SPARKY | NMRFAM | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | collection | TopSpin | Bruker Biospin |