7M67
NMR Structure of Schistocin-1 antimicrobial peptide in presence of DPC-d38 micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 200 mM DPC, 2 mM peptide, 90 % buffer, 0.5 % [U-98% 2H] DSS | 90% H2O/10% D2O | 50 mM | 6.2 | 1 atm | 300 | Bruker AVANCE III 500 |
2 | 2D 1H-1H NOESY | 200 mM DPC, 2 mM peptide, 90 % buffer, 0.5 % [U-98% 2H] DSS | 90% H2O/10% D2O | 50 mM | 6.2 | 1 atm | 300 | Bruker AVANCE III 500 |
3 | 2D 1H-13C HSQC | 200 mM DPC, 2 mM peptide, 90 % buffer, 0.5 % [U-98% 2H] DSS | 90% H2O/10% D2O | 50 mM | 6.2 | 1 atm | 300 | Bruker AVANCE III 500 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 40 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | 4.0.7 | Bruker Biospin |
2 | data analysis | CcpNmr Analysis | 2.4.2 | CCPN |
3 | structure calculation | ARIA | 2.3 | Linge, O'Donoghue and Nilges |
4 | refinement | CNS | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |