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AALALL segment from the Nucleoprotein of SARS-CoV-2, residues 217-222, crystal form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other ideal beta strand AAAAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 298 polyethylene glycol 3000, CHES, pH 9.5
Crystal Properties Matthews coefficient Solvent content 2.03 39.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.46 α = 90 b = 9.54 β = 90 c = 10.95 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 22.23 93 0.105 0.121 0.997 5.94 3.781 1234 20.927
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.36 84.8 0.808 0.922 0.544 1.8 3.957
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE ideal beta strand AAAAA 1.303 22.23 1234 124 92.992 0.199 0.1948 0.195 0.236 0.2376 16.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.451 -0.87 0.419
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.102 r_dihedral_angle_3_deg 5.506 r_lrange_it 4.505 r_lrange_other 4.406 r_scangle_it 3.021 r_scangle_other 2.99 r_mcangle_other 2.735 r_mcangle_it 2.714 r_scbond_it 1.833 r_scbond_other 1.811
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.102 r_dihedral_angle_3_deg 5.506 r_lrange_it 4.505 r_lrange_other 4.406 r_scangle_it 3.021 r_scangle_other 2.99 r_mcangle_other 2.735 r_mcangle_it 2.714 r_scbond_it 1.833 r_scbond_other 1.811 r_mcbond_it 1.649 r_mcbond_other 1.458 r_angle_refined_deg 1.179 r_angle_other_deg 0.869 r_nbd_other 0.154 r_symmetry_nbd_other 0.127 r_symmetry_nbtor_other 0.086 r_nbtor_refined 0.085 r_symmetry_xyhbond_nbd_refined 0.079 r_chiral_restr 0.045 r_xyhbond_nbd_refined 0.017 r_symmetry_nbd_refined 0.008 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 40 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction