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SAMHD1(113-626) H206R D207N R366C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BZB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.2 293 PEG 1500, dGTP, SPG buffer, sodium chloride, magnesium chloride, TCEP
Crystal Properties Matthews coefficient Solvent content 2.03 39.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.926 α = 90 b = 140.105 β = 114.18 c = 97.193 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.979 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 98.9 0.071 0.996 17.3 3.3 153730
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 98.8 1.311 0.297 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4BZB 1.9 39.38 145958 7738 98.85 0.1792 0.1775 0.1885 0.2116 0.2162 RANDOM 46.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 0.09 0.73 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.137 r_dihedral_angle_3_deg 17.969 r_dihedral_angle_4_deg 17.877 r_dihedral_angle_1_deg 5.943 r_angle_refined_deg 1.698 r_angle_other_deg 1.389 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.137 r_dihedral_angle_3_deg 17.969 r_dihedral_angle_4_deg 17.877 r_dihedral_angle_1_deg 5.943 r_angle_refined_deg 1.698 r_angle_other_deg 1.389 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15712 Nucleic Acid Atoms Solvent Atoms 611 Heterogen Atoms 252
Software Software Software Name Purpose REFMAC refinement PHASER phasing PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling