Experiment: 7LRL

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2Q9G

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293.15	18.5% PEG 3350, 0.4M Calcium Cl

Crystal Properties
Matthews coefficient	Solvent content
2.1	41.51

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.241	α = 90
b = 63.532	β = 90
c = 123.749	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r		2011-09-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALS BEAMLINE 5.0.3	0.976	ALS	5.0.3

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.995	35.3	98.8	0.126	12.6	5.9		31636

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.995	2.03	83.2		0.609	1.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2Q9G	1.995	35.272	31636	1608	98.85	0.22	0.2193	0.2365	16.735

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.554			-0.628		0.074

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.757
r_dihedral_angle_4_deg	15.617
r_dihedral_angle_3_deg	13.252
r_dihedral_angle_1_deg	5.127
r_lrange_it	3.599
r_scangle_it	2.311
r_angle_refined_deg	1.619
r_scbond_it	1.611
r_mcangle_it	1.15
r_mcbond_it	0.67

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.757
r_dihedral_angle_4_deg	15.617
r_dihedral_angle_3_deg	13.252
r_dihedral_angle_1_deg	5.127
r_lrange_it	3.599
r_scangle_it	2.311
r_angle_refined_deg	1.619
r_scbond_it	1.611
r_mcangle_it	1.15
r_mcbond_it	0.67
r_nbtor_refined	0.312
r_nbd_refined	0.219
r_symmetry_nbd_refined	0.192
r_xyhbond_nbd_refined	0.162
r_symmetry_xyhbond_nbd_refined	0.106
r_chiral_restr	0.09
r_bond_refined_d	0.014
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3506
Nucleic Acid Atoms
Solvent Atoms	195
Heterogen Atoms	71

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.