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Co-complex CYP46A1 with 7742 (Soticlestat/TAK-935))
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Q9G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 18.5% PEG 3350, 0.4M Calcium Cl
Crystal Properties Matthews coefficient Solvent content 2.1 41.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.241 α = 90 b = 63.532 β = 90 c = 123.749 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.976 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.995 35.3 98.8 0.126 12.6 5.9 31636
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.995 2.03 83.2 0.609 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2Q9G 1.995 35.272 31636 1608 98.85 0.22 0.2193 0.2199 0.2365 0.237 16.735
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.554 -0.628 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.757 r_dihedral_angle_4_deg 15.617 r_dihedral_angle_3_deg 13.252 r_dihedral_angle_1_deg 5.127 r_lrange_it 3.599 r_scangle_it 2.311 r_angle_refined_deg 1.619 r_scbond_it 1.611 r_mcangle_it 1.15 r_mcbond_it 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.757 r_dihedral_angle_4_deg 15.617 r_dihedral_angle_3_deg 13.252 r_dihedral_angle_1_deg 5.127 r_lrange_it 3.599 r_scangle_it 2.311 r_angle_refined_deg 1.619 r_scbond_it 1.611 r_mcangle_it 1.15 r_mcbond_it 0.67 r_nbtor_refined 0.312 r_nbd_refined 0.219 r_symmetry_nbd_refined 0.192 r_xyhbond_nbd_refined 0.162 r_symmetry_xyhbond_nbd_refined 0.106 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3506 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing