Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
The model was generated by rigid body fitting of the SLFN12 and PDE3A bodies (from multi-body refinement and deposited separately) into this map using ...
The model was generated by rigid body fitting of the SLFN12 and PDE3A bodies (from multi-body refinement and deposited separately) into this map using UCSF Chimera and Coot, followed by local refinement in Coot of the linkers between the bodies to ameliorate backbone geometry.
Data Acquisition
Detector Type
GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)
50
Imaging Experiment
1
Date of Experiment
Temperature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
81000
Calibrated Magnification
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
EM Software
Task
Software Package
Version
IMAGE ACQUISITION
EPU
2.5
CTF CORRECTION
CTFFIND
4.1.13
INITIAL EULER ASSIGNMENT
cisTEM
1.0.0-beta
FINAL EULER ASSIGNMENT
RELION
3.1
CLASSIFICATION
RELION
3.1
RECONSTRUCTION
RELION
3.1
MODEL REFINEMENT
UCSF Chimera
1.13
MODEL REFINEMENT
Coot
0.8.9
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
CTF correction was applied throughout the entire processing workflow, beginning with particle picking