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Pseudomonas fluorescens G150T isocyanide hydratase (G150T-1) at 274K, Refmac5-refined
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6NI4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 25% PEG 3350, 200 MM MAGNESIUM
CHLORIDE, 100MM TRIS-HCL, PH 8.6, 2 MM dithiothreitol
Crystal Properties Matthews coefficient Solvent content 2.25 45.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.295 α = 90 b = 59.716 β = 110.876 c = 69.505 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 274 PIXEL DECTRIS PILATUS 6M Flat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M2 2018-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.775 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.149 39.5 97.4 0.052 0.999 12 3.8 74206
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.149 1.17 94.3 1.72 0.366 0.9 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6NI4 1.149 39.5 74206 2238 97.15 0.128 0.1272 0.1271 0.1425 0.1424 random 17.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.127 -0.129 0.029 0.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.343 r_dihedral_angle_4_deg 15.422 r_dihedral_angle_3_deg 12.601 r_dihedral_angle_1_deg 5.811 r_lrange_it 3.283 r_lrange_other 3.028 r_scangle_it 2.629 r_scangle_other 2.628 r_mcangle_other 2.007 r_mcangle_it 2.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.343 r_dihedral_angle_4_deg 15.422 r_dihedral_angle_3_deg 12.601 r_dihedral_angle_1_deg 5.811 r_lrange_it 3.283 r_lrange_other 3.028 r_scangle_it 2.629 r_scangle_other 2.628 r_mcangle_other 2.007 r_mcangle_it 2.005 r_scbond_it 1.99 r_scbond_other 1.989 r_rigid_bond_restr 1.558 r_mcbond_it 1.523 r_mcbond_other 1.516 r_angle_other_deg 1.51 r_angle_refined_deg 1.496 r_symmetry_xyhbond_nbd_refined 0.362 r_xyhbond_nbd_refined 0.258 r_nbd_refined 0.233 r_symmetry_nbd_refined 0.222 r_nbd_other 0.179 r_symmetry_nbd_other 0.176 r_xyhbond_nbd_other 0.175 r_nbtor_refined 0.164 r_symmetry_xyhbond_nbd_other 0.142 r_chiral_restr 0.086 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1673 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing