7L9Z

Pseudomonas fluorescens G150A isocyanide hydratase (G150A-1) at 274K, Refmac5-refined


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.629823% PEG 3350, 100MM TRIS-HCL PH 8.6, 200 MM MAGNESIUM CHLORIDE AND 2 MM DITHIOTHREITOL
Crystal Properties
Matthews coefficientSolvent content
2.1943.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.249α = 90
b = 58.133β = 112.782
c = 69.087γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray274PIXELDECTRIS PILATUS 6MFlat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M22018-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.775SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.339.11980.0570.99810.42.9100703
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3295.81.2590.4052.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6NI51.339.109100597307697.880.120.11910.1463random19.397
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0250.231-0.2650.034
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.57
r_dihedral_angle_4_deg19.818
r_dihedral_angle_3_deg12.801
r_dihedral_angle_1_deg6.303
r_lrange_it3.122
r_lrange_other2.95
r_scangle_it2.579
r_scangle_other2.579
r_scbond_it2.065
r_scbond_other2.065
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.57
r_dihedral_angle_4_deg19.818
r_dihedral_angle_3_deg12.801
r_dihedral_angle_1_deg6.303
r_lrange_it3.122
r_lrange_other2.95
r_scangle_it2.579
r_scangle_other2.579
r_scbond_it2.065
r_scbond_other2.065
r_mcangle_other1.842
r_mcangle_it1.841
r_angle_refined_deg1.434
r_angle_other_deg1.426
r_mcbond_it1.42
r_mcbond_other1.416
r_rigid_bond_restr1.4
r_nbd_refined0.222
r_xyhbond_nbd_refined0.216
r_nbd_other0.181
r_symmetry_nbd_other0.175
r_symmetry_xyhbond_nbd_refined0.171
r_nbtor_refined0.158
r_symmetry_nbd_refined0.122
r_symmetry_nbtor_other0.078
r_chiral_restr0.077
r_symmetry_xyhbond_nbd_other0.037
r_bond_refined_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3374
Nucleic Acid Atoms
Solvent Atoms334
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
autoXDSdata reduction
Aimlessdata scaling
PHASERphasing