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Symmetry in Yeast Alcohol Dehydrogenase 1 -Closed Form with NAD+ and Trifluoroethanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ENV
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.7123 f_angle_d 0.8708 f_chiral_restr 0.0634 f_bond_d 0.0109 f_plane_restr 0.0062
Sample Alcohol Dehydrogenase NAD+ Pyrazole complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK II Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 1284904 Reported Resolution (Å) 2.77 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5ENV) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Correlation Coefficient Overall B Value 39.3 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 54
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION Gctf 1.06 MODEL FITTING PHENIX 1.17 MODEL REFINEMENT PHENIX 1.17 RECONSTRUCTION cryoSPARC 2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE