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Transmembrane structure of TNFR1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCO 0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] Protein, 20 mM sodium phosphate, 50 mM DMPC, 100 mM DHPC 90% H2O/10% D2O 50 mM 6.8 1 atm 303 Bruker AVANCE 600 2 3D HNCA 0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] Protein, 20 mM sodium phosphate, 50 mM DMPC, 100 mM DHPC 90% H2O/10% D2O 50 mM 6.8 1 atm 303 Bruker AVANCE 600 3 3D HNCACO 0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] Protein, 20 mM sodium phosphate, 50 mM DMPC, 100 mM DHPC 90% H2O/10% D2O 50 mM 6.8 1 atm 303 Bruker AVANCE 600 4 3D 1H-15N NOESY 0.7 mM [U-100% 13C; U-100% 15N] Protein, 20 mM sodium phosphate, 50 mM DMPC, 100 mM DHPC 90% H2O/10% D2O 50 mM 6.8 1 atm 303 Bruker AVANCE 750 5 3D 1H-15N NOESY 0.4 mM [U-100% 13C] Protein A, 20 mM sodium phosphate, 50 mM DMPC, 100 mM DHPC, 0.4 mM [U-100% 2H; U-100% 15N] Protein B 90% H2O/10% D2O 50 mM 6.8 1 atm 303 Bruker AVANCE 800 6 3D 1H-13C NOESY FOR METHYLS 0.4 mM [U-100% 13C] Protein A, 20 mM sodium phosphate, 50 mM DMPC, 100 mM DHPC, 0.4 mM [U-100% 2H; U-100% 15N] Protein B 90% H2O/10% D2O 50 mM 6.8 1 atm 303 Bruker AVANCE 750 7 2D 1H-13C HSQC 0.7 mM [U-100% 13C; U-100% 15N] Protein, 20 mM sodium phosphate, 50 mM DMPC, 100 mM DHPC 90% H2O/10% D2O 50 mM 6.8 1 atm 303 Bruker AVANCE 750
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 750 3 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 15 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment XEASY Bartels 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore