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HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 2F
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other previously determined structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 16% PEG6000, 0.10 M KCL, 0.10 M MES pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.62 53.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.453 α = 90 b = 108.255 β = 90 c = 142.34 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 86.17 98.4 0.054 0.062 0.997 14.26 4.3 53166 72.775
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.67 99.1 0.561 0.637 0.991 3.28 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT previously determined structure 2.42 86.17 52030 1136 98.42 0.2215 0.2206 0.2671 0.3002 RANDOM 77.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.24 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.145 r_dihedral_angle_4_deg 15.863 r_dihedral_angle_3_deg 13.853 r_dihedral_angle_1_deg 5.481 r_angle_refined_deg 1.184 r_angle_other_deg 0.98 r_chiral_restr 0.064 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.145 r_dihedral_angle_4_deg 15.863 r_dihedral_angle_3_deg 13.853 r_dihedral_angle_1_deg 5.481 r_angle_refined_deg 1.184 r_angle_other_deg 0.98 r_chiral_restr 0.064 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8884 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 36
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing