☰ Navigation Tabs
Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z32367954 (A71EV2A-x0853)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.05 293.15 0.1 M MES, pH 6.05, 16 % PEG 20,000
Crystal Properties Matthews coefficient Solvent content 2.36 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.854 α = 90 b = 56.61 β = 94.82 c = 32.163 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-12-03 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.94055 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.19 32.05 98.3 0.079 0.086 0.033 0.999 9.2 6.3 48325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.19 1.25 100 2.039 2.233 0.892 0.359 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.19 32.07 44951 2305 96.04 0.34189 0.33935 0.3469 0.38971 0.3896 RANDOM 27.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.61 -0.16 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.074 r_dihedral_angle_4_deg 16.754 r_dihedral_angle_3_deg 14.831 r_long_range_B_refined 9.475 r_long_range_B_other 9.474 r_dihedral_angle_1_deg 7.588 r_mcangle_it 2.613 r_mcangle_other 2.612 r_scangle_other 1.782 r_angle_refined_deg 1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.074 r_dihedral_angle_4_deg 16.754 r_dihedral_angle_3_deg 14.831 r_long_range_B_refined 9.475 r_long_range_B_other 9.474 r_dihedral_angle_1_deg 7.588 r_mcangle_it 2.613 r_mcangle_other 2.612 r_scangle_other 1.782 r_angle_refined_deg 1.52 r_mcbond_other 1.362 r_mcbond_it 1.335 r_angle_other_deg 1.246 r_scbond_other 1.021 r_scbond_it 1.017 r_chiral_restr 0.06 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1083 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement REFMAC5 refinement Aimless data scaling PHASER phasing XDS data reduction