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Acinetobacter baumannii Thioredoxin reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TRB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 14% PEG 1000, 0.1M Tris-HCl (pH 6.4), 50mM CaCl2
Crystal Properties Matthews coefficient Solvent content 2.41 48.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.1 α = 90 b = 60.11 β = 125.445 c = 73.75 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 125 PIXEL DECTRIS EIGER2 X 9M 2020-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9796 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 26.895 99.91 0.137 8.3 6.7 25409
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.949 1.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1TRB 1.9 26.894 25402 1271 99.847 0.216 0.2141 0.2175 0.2525 0.2577 39.439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.028 0.014 -0.021 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.084 r_dihedral_angle_4_deg 21.328 r_dihedral_angle_3_deg 16.373 r_lrange_it 9.997 r_lrange_other 9.997 r_scangle_it 8.233 r_scangle_other 8.23 r_mcangle_it 5.779 r_mcangle_other 5.779 r_scbond_it 5.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.084 r_dihedral_angle_4_deg 21.328 r_dihedral_angle_3_deg 16.373 r_lrange_it 9.997 r_lrange_other 9.997 r_scangle_it 8.233 r_scangle_other 8.23 r_mcangle_it 5.779 r_mcangle_other 5.779 r_scbond_it 5.47 r_scbond_other 5.468 r_dihedral_angle_1_deg 5.351 r_mcbond_it 4.189 r_mcbond_other 4.187 r_angle_other_deg 2.36 r_angle_refined_deg 1.737 r_symmetry_nbd_refined 0.273 r_symmetry_nbd_other 0.23 r_nbd_other 0.227 r_nbd_refined 0.208 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.167 r_symmetry_xyhbond_nbd_other 0.117 r_chiral_restr 0.093 r_symmetry_xyhbond_nbd_refined 0.082 r_symmetry_nbtor_other 0.079 r_bond_other_d 0.037 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2349 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing