7DTA

Solution structure of the C-clamp domain from human HDBP1 in complex with DNA

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950
2	2D 1H-13C HSQC	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950
5	3D HNCACB	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 500
6	3D CBCA(CO)NH	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 500
9	3D CCH-COSY	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 500
8	3D 1H-15N NOESY	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950
7	3D 1H-13C NOESY	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950
10	2D 1H-13C NOESY aromatic	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950
11	2D F1, F2-15N/13C-filtered 1H-1H NOESY	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950
12	3D F1-15N/13C filtered, F2-15N edited NOESY	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950
13	3D F1-15N/13C filtered, F2-13C edited NOESY	0.5 mM [U-13C; U-15N] C-clamp, 0.5 mM HD5-DNA	95% H2O/5% D2O	10 mM sodium phosphate, 10 mM NaCl mM	7	1 bar	298	Bruker AVANCE III HD 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	950
2	Bruker	AVANCE III HD	500

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
5	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2	data analysis	SANE		Duggan, Legge, Dyson & Wright
3	chemical shift assignment	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	peak picking	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax