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Crystal structure of TEAD3 in complex with VT105
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EMW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291.15 1.26M Sodium di-hydrogen Phosphate, 0.14M di-Potassium hydrogen Phosphate, PH 5.6
Crystal Properties Matthews coefficient Solvent content 2.99 58.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.808 α = 90 b = 65.372 β = 90 c = 123.016 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2018-08-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97918 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 150.81 99.7 0.999 15.1 11.6 38106
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 0.843
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 5EMW 2.6 64.371 38044 1932 99.626 0.226 0.2236 0.2254 0.2734 0.2684 75.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.761 -9.841 8.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.844 r_dihedral_angle_4_deg 17.556 r_dihedral_angle_3_deg 15.655 r_lrange_other 9.294 r_lrange_it 9.283 r_dihedral_angle_1_deg 7.637 r_mcangle_it 5.909 r_mcangle_other 5.908 r_scangle_it 5.727 r_scangle_other 5.723
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.844 r_dihedral_angle_4_deg 17.556 r_dihedral_angle_3_deg 15.655 r_lrange_other 9.294 r_lrange_it 9.283 r_dihedral_angle_1_deg 7.637 r_mcangle_it 5.909 r_mcangle_other 5.908 r_scangle_it 5.727 r_scangle_other 5.723 r_mcbond_it 3.531 r_mcbond_other 3.531 r_scbond_it 3.377 r_scbond_other 3.361 r_angle_refined_deg 1.238 r_angle_other_deg 1.083 r_symmetry_nbd_refined 0.27 r_nbd_other 0.217 r_symmetry_nbd_other 0.182 r_nbd_refined 0.175 r_xyhbond_nbd_refined 0.162 r_symmetry_xyhbond_nbd_refined 0.161 r_nbtor_refined 0.16 r_symmetry_nbtor_other 0.071 r_symmetry_xyhbond_nbd_other 0.048 r_chiral_restr 0.041 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6846 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms 148
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing