X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7C7M 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.3 M Magnesium formate dihydrate, 26% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.6353.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.519α = 90
b = 96.684β = 90
c = 211.428γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2019-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL19U11.00000SSRFBL19U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75096.80.0650.99831.96.234032
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.899.40.611.886.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7C7M2.749.932206168096.830.244230.242040.285RANDOM82.731
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.613.46-2.84
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.54
r_dihedral_angle_4_deg13.9
r_dihedral_angle_3_deg13.785
r_dihedral_angle_1_deg4.862
r_long_range_B_refined2.69
r_long_range_B_other2.69
r_mcangle_it1.204
r_mcangle_other1.204
r_scangle_other0.774
r_angle_refined_deg0.771
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.54
r_dihedral_angle_4_deg13.9
r_dihedral_angle_3_deg13.785
r_dihedral_angle_1_deg4.862
r_long_range_B_refined2.69
r_long_range_B_other2.69
r_mcangle_it1.204
r_mcangle_other1.204
r_scangle_other0.774
r_angle_refined_deg0.771
r_angle_other_deg0.699
r_mcbond_other0.651
r_mcbond_it0.65
r_scbond_it0.422
r_scbond_other0.422
r_chiral_restr0.031
r_bond_refined_d0.003
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7860
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms152

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing